alyamahmoud

the-turing-way

Host repository for The Turing Way: a how to guide for reproducible data science

cobratoolbox

The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:

ABC-Enhancer-Gene-Prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

carveme

CarveMe: genome-scale metabolic model reconstruction

OpenPBTA-analysis

The analysis repository for the Open Pediatric Brain Tumor Atlas Project

sars2pack

An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources

desihigh

An introduction to DESI & Dark Energy for high schoolers with hot-off-the-telescope data! :telescope:

Multimodal-autoencoder-for-breast-cancer

Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data

Recon3D

A 3-Dimensional View of Human Metabolism and Disease

NMF-based-biomarker-identification

Faster and more robust method of detecting biomarkers for Alzheimer's disease. Team Canada ISEF project for 2018-2019

CanIsoNet

Predicting pathogenic impact of isoform switches in 1209 cancer samples covering 27 cancer types using an isoform-specific interaction network

cffDNA-and-Brain-Manuscript

Analyses for the manuscript "Multi-omic Brain and Behavioral Correlates of Cell-free Fetal DNA Methylation in Macaque Maternal Obesity Models."

scRNA

hepatonet

getting-started

A repo for Callysto related useful notebooks and materials to help teachers and users get started with using the hub environment and notebooks.

bigg_models_data

The flat files for the BiGG Models website

CAMDA-2017-Neuroblastoma