alyamahmoud

coinfection_modeling

code used for analysis and visualization of the variation in gene essentiality and metabolic capabilities between single and co-infection scenarios for V. cholera

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

computational-biology

curriculum-notebooks

Home of curriculum-related notebook content.

data-science-coursework

DESI-HighSchool

An introduction to DESI & Dark Energy for high schoolers with hot-off-the-telescope data! :telescope:

Developing_Data_Products

Developing Data Products Course from the Johns Hopkins Data Science Lab

dlaicourse

Notebooks for learning deep learning

DSND_Term2

Contains files related to content and project of DSND Term 2

getting-started

A repo for Callysto related useful notebooks and materials to help teachers and users get started with using the hub environment and notebooks.

my-first-binder

NCBIComputationalCookbook

Jupyter notebooks and other things to more effectively leverage computational resources at NCBI

pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

sars2pack

Up-to-date data resources, analysis tools, and visualizations for COVID-19 pandemic data

scRNA.seq.course

Analysis of single cell RNA-seq data course, Cambridge University, UK

stackoverflow

Findings from Stackoverflow 2017

UoC_morrissy_lab

utilities

utilities scripts that I have been using cross several projects