alperbulbul1

Python

All Algorithms implemented in Python

excalidraw

Virtual whiteboard for sketching hand-drawn like diagrams

ChatDev

Create Customized Software using Natural Language Idea (through LLM-powered Multi-Agent Collaboration)

PySnooper

Never use print for debugging again

nougat

Implementation of Nougat Neural Optical Understanding for Academic Documents

sh

Python process launching

DevOpsGPT

Multi agent system for AI-driven software development. Combine LLM with DevOps tools to convert natural language requirements into working software. Supports any development language and extends the existing code.

pytorch_geometric_temporal

PyTorch Geometric Temporal: Spatiotemporal Signal Processing with Neural Machine Learning Models (CIKM 2021)

briefcase

Tools to support converting a Python project into a standalone native application.

deeplearning-biology

A list of deep learning implementations in biology

CogDL

CogDL: A Comprehensive Library for Graph Deep Learning (WWW 2023)

PGL

Paddle Graph Learning (PGL) is an efficient and flexible graph learning framework based on PaddlePaddle

awesome-deep-learning-single-cell-papers

KMC

Fast and frugal disk based k-mer counter

sgkit

Scalable genetics toolkit

smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data

EIG

Eigen tools by Nick Patterson and Alkes Price lab

pugz

Truly parallel gzip decompression

DeepProg

Deep-Learning framework for multi-omic and survival data integration

st-cytoscape

KGGseq

pyPARAGON

PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference

CompoundHetVIP

A pipeline for the identification of Compound Heterozygous Variants

mode-of-inheritance

Provides mode of inheritance prediction for all possible missense variants in the human genome.

PRStuning

Using GWAS summary statistics from the training dataset to tune PRS model parameters

DovizOfisi

OgrenciKayitSistemi

SignalRProject

Tic-Tac-Toe

kegnn

Knowledge Enhanced Graph Neural Networks. We combine Knowledge Enhancement layers with Graph Neural Networks