Alper Bülbül's starred repositories

sh

Python process launching

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kegnn

Knowledge Enhanced Graph Neural Networks. We combine Knowledge Enhancement layers with Graph Neural Networks

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EIG

Eigen tools by Nick Patterson and Alkes Price lab

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CompoundHetVIP

A pipeline for the identification of Compound Heterozygous Variants

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excalidraw

Virtual whiteboard for sketching hand-drawn like diagrams

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PRStuning

Using GWAS summary statistics from the training dataset to tune PRS model parameters

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sgkit

Scalable genetics toolkit

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pugz

Truly parallel gzip decompression

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KMC

Fast and frugal disk based k-mer counter

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smudgeplot

Inference of ploidy and heterozygosity structure using whole genome sequencing data

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ChatDev

Create Customized Software using Natural Language Idea (through LLM-powered Multi-Agent Collaboration)

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nougat

Implementation of Nougat Neural Optical Understanding for Academic Documents

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briefcase

Tools to support converting a Python project into a standalone native application.

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PySnooper

Never use print for debugging again

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DeepProg

Deep-Learning framework for multi-omic and survival data integration

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deeplearning-biology

A list of deep learning implementations in biology

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pytorch_geometric_temporal

PyTorch Geometric Temporal: Spatiotemporal Signal Processing with Neural Machine Learning Models (CIKM 2021)

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PGL

Paddle Graph Learning (PGL) is an efficient and flexible graph learning framework based on PaddlePaddle

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CogDL

CogDL: A Comprehensive Library for Graph Deep Learning (WWW 2023)

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Python

All Algorithms implemented in Python

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DevOpsGPT

Multi agent system for AI-driven software development. Combine LLM with DevOps tools to convert natural language requirements into working software. Supports any development language and extends the existing code.

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pyPARAGON

PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference

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mode-of-inheritance

Provides mode of inheritance prediction for all possible missense variants in the human genome.

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