alisterburt

autoalign_dynamo

automated on-the-fly tilt-series alignment

dynamo2emClarity

A tool for conversion between subtomogram averaging softwares Dynamo and emClarity

emanjson2imodxf

Convert EMAN2 tilt series alignments to IMOD format

minimal-rich-typer-cli

mpl_animation

Playing with the matplotlib animation framework

emClarity_setup

Takes a set of tilt series aligned in IMOD and prepares the files necessary for emClarity

spsim

single particle image simulation from molecular dynamics trajectories using PARAKEET

warp2relion-tomo

ABTT

Useful tools for cryo-EM/cryo-ET

dask-hpc-example

example of how to parallelise arbitrary work on HPC using dask

mrchead

CLI tool for looking at mrc file headers

napari-etdb

napari-mrcfile

A napari plugin for MRC file IO

peepingtom

Looking at cryo-electron tomography data

amplus-digital-twin

Phantom generator

cgm-remote-monitor

nightscout web monitor

cookiecutter-napari-plugin

Cookiecutter for napari plugins

emfile

Basic utility to read tomography data from files in *.em format.

eralda

it means transform in Basque

freeaps

FreeAPS X - an artificial pancreas system for iOS based on OpenAPS

Loop

An automated insulin delivery app template for iOS, built on LoopKit

loopdocs

Loop Docs - http://loopdocs.org/

meeting-notes

Notes from weekly napari meetings

napari-spot-detection-tutorial

A tutorial on performing spot detection using napari, scikit-image, and scipy

napari.github.io

website for the napari image viewer

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pathlibls

teamtomo

A collaborative knowledge sharing platform for the cryo-ET community