Alice Minotto's repositories
cicd-pipeline-train-schedule-git
Train Schedule sample app for Git exercises
cyverseuk-util
A collection of scripts for the cyverse UK clusters
demo_image
tiny blast image for workshop demonstration
kallisto_docker
docker image for kallisto
model_version2
second model with classes
polymarker_docker
dockerfile for automate build
python-novice-inflammation
Software Carpentry introduction to Python for novices using inflammation data.
redis
Redis is an in-memory database that persists on disk. The data model is key-value, but many different kind of values are supported: Strings, Lists, Sets, Sorted Sets, Hashes, Streams, HyperLogLogs, Bitmaps.
TADbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models