alhashimilab / Singly_HB_AU

PDB survey for Singly H-bond AU bps in the PDB

Singly_HB_AU

PDB survey for Singly H-bond AU bps in the PDB

This is the PDB survey results for the m6A kinetics paper

Ref: Liu et al, (2020) "A quantitative model predicts how m6A reshapes the kinetic landscape of nucleic acid hybridization and conformational transitions" BioRxiv

RNA_AU_single_Hbond_X_ray_NMR_final.csv

This sheet contains the bp information for all the singly H-bonded AU bps from the PDB survey.

RNA_AU_single_Hbond_PSE.zip

This zip file contains all the structures (pse files) of singly H-bonded AU bps.

survey_pdb_search.ipynb

This notebook contains the code to process and analyze the singly H-bonded AU bp from the survey results (RNA_AU_single_Hbond_X_ray_NMR_final.csv).