alhashimilab / RDC

All NMR RDCs used for determination of ensemble

RDC

RDC database of nucleic acids summarized by al-hashimi lab

Note: not all RDCs are measured by al-hashimi lab

Data Format (csv file)

res_id_1: the first atom's residue index

res_name_1: the first atom's residue name

atom_1: the first atom name

res_id_2: the second atom's residue index

res_name_2: the second atom's residue name

atom_2: the second atom name

bond_vector: the RDC bond vector

rdc: the RDC value

Data Description

TAR

Al-Hashimi lab

E0-TAR.sas.csv (TAR with UUCG apical loop) (Al-Hashimi H.M. et al. 2002 JMB)

EI22-TAR.sas.csv (TAR HI elongated 22 bps with UUCG apical loop) (Zhang Q. et al. 2007 Nature)

EII22-TAR.sas.csv (TAR HII elongated 22 bps with UUCG apical loop) (Zhang Q. et al. 2007 Nature)

EI3-TAR.sas.csv (TAR HI elongated 3 bps with UUCG apical loop) (Dethoff E.A. et al. 2010 JMR)

E0_MG-TAR.sas.csv (TAR with wild-type apical loop in Mg2+) (Merriman D.K. et al. 2018 RNA)

U1-TAR

Al-Hashimi lab

E0-U1-TAR.sas.csv (1U bulge TAR with wild-type apical loop) (Merriman D.K. et al. 2018 RNA)

E0-MG-U1-TAR.sas.csv (1U bulge TAR with wild-type apical loop in Mg2+) (Merriman D.K. et al. 2018 RNA)

U2-TAR

Al-Hashimi lab

E0-U2-TAR.sas.csv (2U bulge TAR (HIV-2-TAR) with wild-type apical loop) (Merriman D.K. et al. 2016 Biochemistry)

EI22-U2-TAR.sas.csv (2U bulge TAR HII elongated 22 bps with UUCG apical loop) (Zhang Q. et al. 2007 Nature)

U7-TAR

Al-Hashimi lab

E0-U7-TAR.sas.csv (7U bulge TAR with wild-type apical loop) (Merriman D.K. et al. 2018 RNA)

E0-MG-U7-TAR.sas.csv (7U bulge TAR with wild-type apical loop in Mg2+) (Merriman D.K. et al. 2018 RNA)

P2ab (Human Telomerase P2a-J2ab-P2b)

Feigon lab

P2ab.sas.csv (Zhang Q. et al. 2010 PNAS)

Fluoride_Riboswitch (Fluoride Riboswitch)

Zhang lab

FSW.sas.csv (apo form RDC) (Zhao B. et al 2017 Nat Chem Biol)

PreQ1_ClassI_Riboswitch (PreQ1 Class I Riboswitch)

Feigon lab

PreQ1I.sas.csv (holo form RDC) (Zhang Q. et al 2011 JACS)

PreQ1_ClassII_Riboswitch (PreQ1 Class II Riboswitch)

Feigon lab

PreQ1II.sas.csv (holo form RDC) (Kang M. et al 2014 PNAS)