Alex Holehouse's repositories
papers
Material from papers from KULL centre
cython
The most widely used Python to C compiler
psfmi
psfmi: Predictor Selection Functions for Logistic and Cox regression models in multiply imputed datasets
BME
Integrating Molecular Simulation and Experimental Data
enspara
Modeling molecular ensembles with scalable data structures and parallel computing
CAMeLOT
Generalized implementation of CAMeLot
rscode
Python script used to identify RS-rich domains
molssi_devops_2019
Package for 2019 workshop!
molssi_develop_2019
molssi 2019 tutorial
proteomeScoutAPI
Python API to access ProteomeScout flatfiles [proteomescout.wustl.edu]
mdtraj
A modern, open library for the analysis of molecular dynamics trajectories
SBMLIntegrator
SBML model editor and integrator - *very* much in alpha
pdbParser
Robust parsing API for PDB files
stackedBarGraph
stackedBarGraph
trjmutator
Allows mutation of a specific residue in a .xtc trajectory file to glycine
autoQ
Wrapper around PBS/SGE type queuing systems to automatically resubmit jobs
pyTANGO
Python wrapper around the aggregation propensity prediction tool TANGO for Linux usage
biotools
Collection of bioinformatics tools
TranTools
Collection of Python command line tools for exploring and describing Fortran code
systools
General system tools
cli
My command line interface tools for python projects
pufferfish
Super simple, super lightweight dna compression tool