Alex Holehouse's repositories
pufferfish
Super simple, super lightweight dna compression tool
SBMLIntegrator
SBML model editor and integrator - *very* much in alpha
autoClasser
Make header and class files using a default template. Save ~ 1 min per class...
autoQ
Wrapper around PBS/SGE type queuing systems to automatically resubmit jobs
biotools
Collection of bioinformatics tools
CAMeLOT
Generalized implementation of CAMeLot
cli
My command line interface tools for python projects
cython
The most widely used Python to C compiler
enspara
Modeling molecular ensembles with scalable data structures and parallel computing
mdtraj
A modern, open library for the analysis of molecular dynamics trajectories
molssi_develop_2019
molssi 2019 tutorial
molssi_devops_2019
Package for 2019 workshop!
papers
Material from papers from KULL centre
pdbParser
Robust parsing API for PDB files
proteomeScoutAPI
Python API to access ProteomeScout flatfiles [proteomescout.wustl.edu]
psfmi
psfmi: Predictor Selection Functions for Logistic and Cox regression models in multiply imputed datasets
pyTANGO
Python wrapper around the aggregation propensity prediction tool TANGO for Linux usage
rscode
Python script used to identify RS-rich domains
stackedBarGraph
stackedBarGraph
systools
General system tools
TranTools
Collection of Python command line tools for exploring and describing Fortran code
trjmutator
Allows mutation of a specific residue in a .xtc trajectory file to glycine