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Alan Hoyle (alanhoyle)

alanhoyle

Geek Repo

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Company:UNC Lineberger Comprehensive Cancer Center

Location:Chapel Hill, NC, USA

Home Page:http://alanhoyle.com/

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Alan Hoyle's starred repositories

synergy-core

Open source core of Synergy, the cross-platform keyboard and mouse sharing tool (Windows, macOS, Linux)

Language:C++License:NOASSERTIONStargazers:10206Issues:350Issues:6648

liquidprompt

A full-featured & carefully designed adaptive prompt for Bash & Zsh

Language:ShellLicense:AGPL-3.0Stargazers:4478Issues:112Issues:407

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

License:MITStargazers:3109Issues:249Issues:23

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

Stargazers:3064Issues:169Issues:10

qlstephen

A QuickLook plugin that lets you view plain text files without a file extension

Language:Objective-CLicense:MITStargazers:2744Issues:65Issues:96

nextflow

A DSL for data-driven computational pipelines

Language:GroovyLicense:Apache-2.0Stargazers:2675Issues:86Issues:3203

docker-wyze-bridge

WebRTC/RTSP/RTMP/LL-HLS bridge for Wyze cams in a docker container

Language:PythonLicense:AGPL-3.0Stargazers:2568Issues:44Issues:762

gatk

Official code repository for GATK versions 4 and up

Language:JavaLicense:NOASSERTIONStargazers:1675Issues:156Issues:4543

Continuity-Activation-Tool

An all-in-one tool to activate and diagnose macOS 10.10-12 Continuity on compatible Mac configurations.

Language:ShellLicense:MITStargazers:1599Issues:137Issues:463

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Language:JavaLicense:MITStargazers:965Issues:159Issues:806

teslausb

Steps and scripts for turning a Raspberry Pi into a useful USB drive for a Tesla

Language:ShellLicense:MITStargazers:566Issues:53Issues:104

FastQC

A quality control analysis tool for high throughput sequencing data

Language:JavaLicense:GPL-3.0Stargazers:425Issues:13Issues:121

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Language:NextflowLicense:MITStargazers:383Issues:127Issues:682

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Language:PerlLicense:NOASSERTIONStargazers:366Issues:80Issues:315

cwltool

Common Workflow Language reference implementation

Language:PythonLicense:Apache-2.0Stargazers:331Issues:44Issues:795

Reference-Cards

Business card-sized references for Arduino and basic electronics

Stargazers:298Issues:75Issues:0

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

Language:NextflowLicense:MITStargazers:275Issues:144Issues:1711

doc-ANNOVAR

Documentation for the ANNOVAR software

Stargazers:224Issues:26Issues:242

xled

🎄Unofficial control for Twinkly - Smart Decoration LED lights.

Language:PythonLicense:MITStargazers:203Issues:17Issues:49

msisensor

microsatellite instability detection using tumor only or paired tumor-normal data

Language:C++License:MITStargazers:124Issues:25Issues:42

Sony-XAV-AX100

Language:BatchfileStargazers:112Issues:31Issues:32

MacroPact

rPico KMK powered macropad with IPS screen

Language:PythonLicense:MITStargazers:104Issues:4Issues:2

biobambam

Tools for bam file processing

Language:C++License:NOASSERTIONStargazers:55Issues:8Issues:0

demultiplex

Demultiplexing pipeline for sequencing data

Language:NextflowLicense:MITStargazers:41Issues:89Issues:101