Alan Hoyle's repositories
bamrescue
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them
cs-nf-pipelines
The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines
diceware
Passphrases to remember
docker-images
Repository of Docker images created by Continuum Analytics
duckyPad-macOS
A duckyPad config for macOS with SQL commands
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
gaptools
dbGaP data validation tool repo
gitignore
A collection of useful .gitignore templates
good-enough-project
A good enough project template for writing reproducible code
learngenomics.dev
A guided, intuitive introduction to genomics for software engineers. Curated by the community.
liquidprompt
A full-featured & carefully designed adaptive prompt for Bash & Zsh
LowCover
Report low coverage regions by e.g. gene given a coverage file and a targets definition file.
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
nextflow
A DSL for data-driven computational pipelines
teslausb
Steps and scripts for turning a Raspberry Pi into a useful USB drive for a Tesla
test-datasets
Test data to be used for automated testing with the nf-core pipelines