Áine O'Toole's repositories
aineniamh.github.io
https://aineniamh.github.io
apobec3
Repository for supplementary materials for hMPXV-1 APOBEC3 paper
artic-measles
Repository for realtime sequencing of measles virus using the MinION
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
artic-rabies
Repo for a snakemake analysis pipeline for rabies sequencing using nanopore technologies.
bioconda-recipes
Conda recipes for the bioconda channel.
editorial-jekyll-theme
A Jekyll version of the "Editorial" theme by HTML5 UP.
future-imperfect-jekyll-theme
A Jekyll version of the "Future Imperfect" theme by HTML5 UP.
iq-brownie
taxon hashing so names don't get corrupted when running iqtree
phantom-jekyll-theme
A Jekyll version of the "Phantom" theme by HTML5 UP.
rampart-ebov
A RAMPART protocol and environment for sequencing Ebola viruses
rampart-polio
Downstream analysis pipeline that takes basecalled reads and a csv file in from RAMPART and for each sample generates consensus sequences and a report of the analysis.
rampart-template
Template repository for configuring rampart to run on your favourite organism
realtime-noro
Tools and protocols for nanopore sequencing of norovirus in real-time.
realtime-rsv
Repository for realtime sequencing of RSV using the MinION