Beast code in Giters

CoV-lineages's repositories

pango-designation

Repository for suggesting new lineages that should be added to the current scheme

Language:Jupyter NotebookNOASSERTION1031 85 2171

pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

Language:PythonGPL-3.0416 45 379

pangoLEARN

Store of the trained model for pangolin to access.

Language:PureBasicGPL-3.053 31 37

constellations

Language:PythonNOASSERTION43 22 32

scorpio

serious constellations of reoccurring phylogenetically-independent origin

Language:PythonGPL-3.038 16 33

lineages

Resources for calling and describing the circulating lineages of SARS-CoV-2

Language:PythonNOASSERTION37 10 17

pangolin-data

Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments

Language:PureBasicGPL-3.027 20 12

lineages-website

Language:HTML16 15 17

llama

Local Lineage and Monophyly Assessment

Language:PythonGPL-3.016 4 5

pangolin-assignment

The latest lineage assignments from pangolin.

Language:PythonGPL-3.08 7 3

lineages-website-old

Language:CSSNOASSERTION7 5 11

grinch

global report investigating novel coronavirus haplotypes

Language:PythonGPL-3.06 5 3

hedgehog

Spikey SARS-CoV-2 sequence based lineage set assignment

Language:PythonGPL-3.04 2 4

pangoLEARN-training

pipeline for training pangoLEARN model

Language:PythonGPL-3.03 40

type_variants

Language:PythonMIT1 20

cov-support

Language:PythonGPL-3.0050

quokka

QUality Of Known Klusters Assessed

Language:PythonGPL-3.0030

Sample_names

040