agitter

py-upset

A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.

lightchem

Light-weight Machine Learning Framework for Drug Discovery

deepchem

Deep-learning models for Drug Discovery and Quantum Chemistry

dragonn

Deep Neural Networks Tutorial for Regulatory Genomics

learn-bioinformatics

List of resources for learning bioinformatics, from beginner to advanced

meo

Maximum Edge Orientation: Discovering Pathways by Orienting Edges in Protein Interaction Networks

OmicsIntegrator

This repository is the working directory for the garnet-forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.

biofiletypes

File types and their extensions for biology

datasci-at-R1-institutions

A (mostly) complete list of data science efforts at R1 institutions

datasciquotes

Data Science related quotes

docker-matlab-runtime

firstpaper

integration-review

keras

Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano and TensorFlow.

LPWC

Short Time Series Clustering Using Lag Penalized Correlation

mfa

Probabilistic inference of single-cell bifurcations

models

Model zoo for genomics

Paradigm

PAthway Representation and Analysis by Direct Inference on Graphical Models

policies-database

Database of journal policies: TRANsparency in Scholarly Publishing for Open Scholarship Evolution

qvalue

Converts p-values into q-values, see (Storey and Tibshirani, 2003)

STEM_DREM

Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)

Vagelos2017

A report on the work done during Summer 2017 in the Greene Lab