Anthony Gitter's repositories
single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
manubot-awesome-list
Proof of concept for creating awesome lists with Manubot
my-manuscript
Test manuscript from https://github.com/manubot/rootstock
deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
awesome-self-driving-labs
A curated list of self-driving laboratories that combine hardware automation and artificial intelligence to accelerate scientific discovery.
chtc-website-source
Source markdown and contents of the CHTC website
compbio-edi
Curated summary of efforts to promote equity, diversity, and inclusion in computational biology PhD programs and societies.
covid19-review
A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19
deep-rules
Ten Simple Rules for Deep Learning in Biology
dmol-book
Deep learning for molecules and materials book
folding_tools
A collection of *fold* tools
hpc-python
HPC Python lesson materials
htcondor
Snakemake profile for HTCondor
Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
manufesto
Manubot manifesto
ml4bio-workshop
Materials for a workshop introducing machine learning to biologists
OmicsIntegrator2
Prize-Collecting Steiner Forests for Interactomes
PathLinker
Connect the dots in networks.
rosetta
The Rosetta Bio-macromolecule modeling package.
sanbomics
bioinformatics plotting and tools
snakemake-demos
Example Snakefiles for various use cases
spras
Signaling Pathway Reconstruction Analysis Streamliner (SPRAS)
templates-GPUs
Template job submissions using GPUs in CHTC
try-manubot
A repository to practice contributing to a Manubot manuscript