afids / afids-macaca

anatomical fiducials protocol adapted for macaques

AFIDS: macaca

• Adaptation of the AFIDs protocol (https://github.com/afids) to macaca.
• The original protocol for human subjects is at https://github.com/afids/afids-protocol.

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Project Phases

• PHASE1: afids-macaca template validation
• PHASE2: afids single-subject validation
• PHASE3: afids for evaluating subject-to-template registration (RheMAP and animal-warper)
• PHASE4: afids for evaluating template-to-template registration (RheMAP and animal-warper)

Afids validator at: http://afids-validator.herokuapp.com

Resources

• AFIDs protocol: https://github.com/afids
• AFIDs manuscript: http://dx.doi.org/10.1002/hbm.24693
• Prime-RE: https://github.com/PRIME-RE
• RheMAP: https://github.com/PRIME-RE/RheMAP

Open Datasets and Resources

• macaque_25_model_MNI: download, ref
  • M. Mallar Chakravarty, Stephen Frey, and D. Louis Collins. ‘Digital atlas of the monkey brain in stereotactic co-ordinates’ in The Rhesus Monkey Brain In Stereotactic Coordinates, G Paxinos, XF Huang, M Petrides, AW Toga. Elsevier, March 2008.
  • Stephen Frey, Deepak N. Pandya, M. Mallar Chakravarty, Michael Petrides, D. Louis Collins. ‘MNI monkey space’, Neuroscience Research, Volume 65, Supplement 1, pg S130, 2009.
  • Stephen Frey, Deepak N. Pandya, M. Mallar Chakravarty, Lara Bailey, Michael Petrides, D. Louis Collins. ‘An MRI based average macaque monkey stereotaxic atlas and space (MNI monkey space)’, NeuroImage (2011),