afarx

HPV-model

smc.covid

COVID19IncubationPeriod

Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)

CFR_calculation

so-2908822

Code for my answer on StackOverflow (http://stackoverflow.com/a/2970284/168747)

sarscov2-severity-england

Two-Strain-Covid-19-Mathematical-Model-in-the-US

titertools

Tools for maximum-likelihood based titer analysis, dealing with non-detectable titers

pyro-cov

Pyro models of SARS-CoV-2 variants

AntigenicEscape

SARS-CoV-2_Protection_SGTF_Delta_Omicron_BA1_BA2

immunelandscape

NZ-COVID19-reinfectionModel

covidm-mtd-Omi

Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nature Communications (2022).

mumps

reinfections

SARS-CoV-2 reinfection trends in South Africa: analysis of routine surveillance data (Pulliam et al. 2021)

covid-immunity-endemicity

R code in RMarkdown documents associated with the m.s. "Immunological characteristics govern the changing severity of COVID-19 during the transition to endemicity"

DMC21cent

Repository to support the publication

seasonalHCoV

epimdr2

Dose_Interval

Carol-Xamarin

A minimal and beautiful lyrics app for macOS built with Xamarin and C#

CovidNet

Covid-19 LSTM Prediction model

predboot

A R package for computations of optimism-corrected predictive accuracy measures for multivariable prediction models

covid-19-the-economist-global-excess-deaths-model

The Economist's model to estimate excess deaths to the covid-19 pandemic

CovFSA

This is the repository for agent-based simulation, extension algorithms and datasets with results.

h7n9_bdmm-prime

rstan

RStan, the R interface to Stan

COVID19-Japan-Reff

excessCVD