Afar's starred repositories
covid-19-the-economist-global-excess-deaths-model
The Economist's model to estimate excess deaths to the covid-19 pandemic
Carol-Xamarin
A minimal and beautiful lyrics app for macOS built with Xamarin and C#
COVID19IncubationPeriod
Study on estimating incubation period distribution and other epidemiological parameters for a novel coronavirus disease (COVID-19)
covidm-mtd-Omi
Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nature Communications (2022).
reinfections
SARS-CoV-2 reinfection trends in South Africa: analysis of routine surveillance data (Pulliam et al. 2021)
so-2908822
Code for my answer on StackOverflow (http://stackoverflow.com/a/2970284/168747)
covid-immunity-endemicity
R code in RMarkdown documents associated with the m.s. "Immunological characteristics govern the changing severity of COVID-19 during the transition to endemicity"
titertools
Tools for maximum-likelihood based titer analysis, dealing with non-detectable titers