A. Domingues's repositories
JirAgileR
User-friendly :small_blue_diamond:JIRA API wrapper. Track projects & issues from within R
adomingues.github.io
The journey of a bench biologist to the dark arts of bioinformatics
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
anomaly-detection-resources
Anomaly detection related books, papers, videos, and toolboxes
workflows-nextflow
Workflow management with Nextflow and nf-core
tools
Python package with helper tools for the nf-core community.
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
clipseq
UNDER CONSTRUCTION: CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.
enrichR
An R interface to enrichR
redl_domingues_et_al_dev_2020
Deposit of backlisted regions
create_r_apckages
collection of links on how to create R packages
filterReads
Filter alignments on sequence length and/or identity of first nucleotide.
rweekly.org
R Weekly
scID
scID
forgotten_git
All the git commands I keep googling.
makeitprettier
A set of ggplot themes and functions to make plots prrrettier
komaletter
Simple yet flexible Letters via the KOMA-Script LaTeX Bundle from R Markdown
createProjectDirectories
Simple script to quickly set-up a VC project.
readprofiler
[R] Package to characterize aligned reads from BAM files.
bioc-refcard
Bioconductor cheat sheet
littlehelperRs
A package will all those little functions I use make my every day life easier.
cleaneRnames
Single function R package to clean the output of base::make.names
md-cv
markdown cv / résumé built with jekyll
ghibli
Studio Ghibli colour palettes for R
ggpubr
'ggplot2' Based Publication Ready Plots
pandoc-letter
Pandoc template for writing letters in markdown
ggthemes
ggplot themes and scales