adler-sudo's repositories
motif-mark
Generate image of genes given fasta file and motif file. The image identifies exons, introns, and locations of motifs within the gene.
atac-seq-analysis
Visualize scATAC-seq profiles using PCA and UMAP. Construct a support vector classifier (SVC) to predict cell type given ATAC-seq expression profile.
building-a-multibranch-pipeline-project
For an advanced tutorial on how to use Jenkins to build a multibranch Pipeline project with selectively executed stages.
CITEViz
CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq
consData
functions for working with UCSC conservation data
dnnPreMiR
identify pre-miRNAs using CNN models trained on huamn pre-miRNAs dataset
dust-2015
Analysis of dust samples collected from a mixed-use athletic facility at the University of Oregon
floodwater-runtime
Code execution runtime for the STAC Overflow: Map Floodwater from Radar Imagery competition
oregon_wildfire_dashboard
A dashboard for visualization of Oregon Wildfire Data from 1961-2019
rosalind
files for working through rosalind problems