adamsardar / stoneTrees

Integrating 'omics data with biological networks by solving Steiner Tree problems

adamsardar/stoneTrees Issues

GWAS integration?
Updated 2 years ago1
Migrate to github actions
Closed 2 years ago1
Allow for reproducible steiner forest sampling
Closed 4 years ago
Problem with installation (ERROR: unable to collate and parse R files for package ‘stoneTrees’)
Closed 4 years ago
Move to using = rather than <-
Closed 4 years ago
Contrast against other Steiner solving packages
Updated 4 years ago
Add connectivity constraints preemptively?
Updated 4 years ago1
More explicit options to set nThreads
Updated 4 years ago1
Change the default number of bootstraps and/or iterations in Steiner Forest
Updated 4 years ago1
Include CBC as a supported solver
Closed 4 years ago18
Add pkgDown website once documentation is stable
Closed 4 years ago
Look at using rmpk or ompr for the MILP generation
Updated 4 years ago1
Is there a correlation between degree and beta-uniform score in MWCS?
Updated 4 years ago
Document R6 objects more thoroughly
Updated 4 years ago2
Use rbinom rather than sample for bootstraps
Closed 5 years ago
Remove Rcplex and instead work with cplexAPI
Closed 5 years ago2
Explore the use of purr's functions
Updated 5 years ago3
Simplify $identifyMultipleSteinerSolutions
Updated 5 years ago
CRAN or Bioconductor submission?
Updated 5 years ago2
Revisit object design and inheritance
Updated 5 years ago2
Fix indentation
Closed 5 years ago
Add CI testing
Closed 5 years ago1
Break node-separator routine into a seperate function
Updated 5 years ago