adamrp

allopred

Predict allosteric pockets on proteins

American-Gut

American Gut open-access data and IPython notebooks

american-gut-web

The website for the American Gut Project participant portal

biom-format

The Biological Observation Matrix (BIOM) Format Project

connectome

Code for Gur's, Keesha's, and my connectome project

correlations

Code for correlations verification and testing project.

emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets

glowing-dangerzone

Easy SQL connection handlers

keystats

NvChad

Blazing fast Neovim config providing solid defaults and a beautiful UI, enhancing your neovim experience.

picrust

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

pycogent

PyCogent: Official repository for software and unit tests

pyqi

Tools for developing and testing command line interfaces in Python.

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

qiime_test_data

Test input and output for QIIME scripts.

qiime_web_app

qiita

Qiita - A QIIME databasing effort

scikit-bio

Core objects, functions and statistics for working with biological data in Python.

scipy_proceedings

Tools used to generate the SciPy conference proceedings