achacond

Alejando (Alex) Chacon's starred repositories

lv89

C implementation of the Landau-Vishkin algorithm

Language:C++MIT3500

wflambda

WFλ - wavefront alignment with callback match function

Language:C++NOASSERTION800

mmp

MEM mapper prototype

Language:C1300

nixnote2

Nixnote - Evernote desktop client for Linux

Language:C++GPL-3.029500

hail

Cloud-native genomic dataframes and batch computing

Language:PythonMIT95800

fermat

Fermat is a high performance research oriented physically based rendering system, trying to produce beautiful pictures following the mathematician’s principle of least time

Language:C++16400

nucleus

Python and C++ code for reading and writing genomics data.

Language:C++NOASSERTION77800

f5c

Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

Language:CMIT13300

SystemC-tutorial

Brief SystemC getting started tutorial

Language:C++MIT7500

pChase

Pointer-chasing memory benchmark (forked from Doug Pase's code).

Language:C++NOASSERTION5600

SDAccel_Examples

SDAccel Examples

Language:C++NOASSERTION35200

lift

A collection of parallel programming primitives for CPUs and GPUs

Language:C++NOASSERTION1200

libsimdpp

Portable header-only C++ low level SIMD library

Language:C++BSL-1.0120600

neon-guide

Makes ARM NEON documentation accessible (with examples)

CC0-1.037200

zlib-ng

zlib replacement with optimizations for "next generation" systems.

Language:CZlib149600

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Language:PythonBSD-3-Clause314000

Basecalling-comparison

A comparison of different Oxford Nanopore basecallers

Language:PythonGPL-3.031300

allocator

Incubator for a general Unix Device Memory Allocation library

Language:CMIT17400

gemBS

gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).

Language:PythonGPL-3.03200

GKL

Accelerated kernel library for genomics

Language:CMIT10300

gdb-dashboard

Modular visual interface for GDB in Python

Language:Python200

bitmap_allocator

Simple bitmap memory allocator using standard C++ library components

Language:C++100

ksw2

Global alignment and alignment extension

Language:CNOASSERTION12700

portable-snippets

Collection of miscellaneous portable C snippets.

Language:CNOASSERTION67000

manual

Reference manual for ForwardCom instruction set and software standards

Language:TeXNOASSERTION16000

sse2neon

Automatically exported from code.google.com/p/sse2neon

Language:C++28300

ComputeLibrary

The Compute Library is a set of computer vision and machine learning functions optimised for both Arm CPUs and GPUs using SIMD technologies.

Language:C++MIT277700

likwid

Performance monitoring and benchmarking suite

Language:CGPL-3.0162300

PairHMM

Optimization of a Haplotype PairHMM class for GPU processing

Language:C++MIT2400

nbfc

NoteBook FanControl

Language:C#NOASSERTION282200