abyzovlab / CNVnator

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

abyzovlab/CNVnator Issues

Install CNVnator with problem
Updated 2 months ago1
Individual sequencing depth is different
Updated 4 months ago
An error while running in a partial region
Updated 6 months ago4
Compile issues - version dependencies?
Updated 7 months ago9
GT:CN ./1:inf
Updated a year ago1
cnvnator genotype 'TSystem' error
Updated a year ago4
Is CNVnator a software that can only run in single-thread mode?
Updated a year ago10
Does CNVnator support hg38?
Closed a year ago5
*** Break *** segmentation violation
Updated a year ago6
-his step takes too long
Closed a year ago5
Abnormal Average RD and results when use cnvnator
Updated a year ago1
Can't load index file for cram file
Closed a year ago3
Bin size for 20x depth of coverage
Closed 2 years ago2
How are you determining Genotype
Updated 2 years ago3
Doc not enough
Closed 2 years ago2
the parameter for whole exon sequencing
Updated 2 years ago
singularity image failure
Updated 2 years ago1
Bin size and sequence read length?
Closed 2 years ago1
Type of PE in the FORMAT from vcf is set as integer - should be float
Updated 2 years ago
The color meaning of each line that appears when use the view option
Updated 2 years ago1
Visualize multiple chromsomes at once?
Updated 2 years ago1
Use of the "-genome" option?
Closed 2 years ago2
"Assuming male individual!" output
Closed 2 years ago3
Yes, the software requires .fa file for each chromosome.
Updated 2 years ago3
Error in <TROOT::WriteTObject>
Closed 2 years ago4
copy
Closed 2 years ago
Cutoff points for obtaining reliable CNVs
Updated 2 years ago
*** Break *** segmentation violation
Updated 2 years ago1
Problem running CNVnator with draft genome by singularity
Updated 2 years ago1
the batch_size for nanopore data
Updated 3 years ago
There was a crash. This is the entire stack trace of all threads
Updated 3 years ago1
Compilation fails with samtools 1.14 and root 6.22+
Updated 3 years ago1
Exporting CNV calls as VCFs
Closed 3 years ago1
ERROR plotcircular.py
Closed 3 years ago2
Can't find directory 'bin_1000'. Can't find RD histogram for 'chr1'.
Updated 6 months ago11
Use of CNVnator in haploid organisms
Updated 3 years ago1
Getting the number of support reads for each CNV
Updated 3 years ago1
ref genome
Closed 3 years ago
How to download yeppp?
Updated 3 years ago1
No chromosome/contig information parsed.
Updated 2 years ago5
Make error
Updated 3 years ago3
*** Break *** segmentation violation
Updated 3 years ago1
Error plotrdbaf.py
Updated 3 years ago
Can't find directory 'bin_100' in file “/PATH/sample.root”
Updated a year ago19
error to import vcf
Updated 3 years ago1
de novo assembled genomes
Updated 3 years ago3
Error installation
Updated 3 years ago1
cnvnator2vcf.pl error
Updated a year ago13
calls not being generated
Updated 3 years ago3
Compilation error CNVnator
Closed 3 years ago3