ablucher

plotnine

A Grammar of Graphics for Python

GSVA

Gene set variation analysis

brca-exchange

Overall management and deployment of the BRCA Exchange web portal and pipeline scripts

pancancer

Building classifiers using cancer transcriptomes across 33 different cancer-types

TCRP

Few shot learning for cancer

smallmoleculesuite

survminer

Survival Analysis and Visualization

SigMA

Mutational signature analysis for low statistics SNV data

oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

signature.tools.lib

R package containing useful functions for mutational signature analysis

decagon

Graph convolutional neural network for multirelational link prediction

r_learning_resources

List of resources for learning R

ggExtra

📊 Add marginal histograms to ggplot2, and more ggplot2 enhancements

purrr

A functional programming toolkit for R

dplyr

dplyr: A grammar of data manipulation

tidyverse

Easily install and load packages from the tidyverse

glue

Glue strings to data in R. Small, fast, dependency free interpreted string literals.

here_here

I love the here package. Here's why.

The-Documentation-Compendium

📢 Various README templates & tips on writing high-quality documentation that people want to read.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

ggrepel

:round_pushpin: Repel overlapping text labels away from each other in your ggplot2 figures.

PathFX

Most up to date PathFX code

DCell

DCell browser and gene deletion simulator

NBS-ESP

BhGLM

BhGLM (Bayesian hierarchical GLMs and survival models)

BhGLM

BhGLM (Bayesian hierarchical GLMs and survival models)

ggpubr

'ggplot2' Based Publication Ready Plots

ggcorrplot

Visualization of a correlation matrix using ggplot2

oncokb

matchminer

MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials