Beast code in Giters

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

Language:Jupyter NotebookApache-2.04758600

microfilm

Creating figures and animations for multi-channel images with a focus on microscopy.

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attention-is-all-you-need-paper

Original transformer paper: Implementation of Vaswani, Ashish, et al. "Attention is all you need." Advances in neural information processing systems. 2017.

Language:Jupyter NotebookMIT23100

MONAI

AI Toolkit for Healthcare Imaging

Language:PythonApache-2.0586500

tutorial-scipy2021-bioimage-analysis-fundamentals

Tutorial for SciPy 2021 Bioimage Analysis Fundamentals in Python

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server

☁️ Nextcloud server, a safe home for all your data

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napari

napari: a fast, interactive, multi-dimensional image viewer for python

Language:PythonBSD-3-Clause220900

learnopencv

Learn OpenCV : C++ and Python Examples

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CSBDeep

Image restoration for fluorescence microscopy

Language:PythonBSD-3-Clause28500

stardist

StarDist - Object Detection with Star-convex Shapes

Language:PythonBSD-3-Clause92200

cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Language:Jupyter NotebookBSD-3-Clause138200

hrm_containerization

:crystal_ball::microscope: Installation scripts for setting up the HRM in containers. :truck: :construction: :whale:

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TensorFlow-Examples

TensorFlow Tutorial and Examples for Beginners (support TF v1 & v2)

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matlab-tree

A MATLAB class to represent the tree data structure.

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scipy

SciPy library main repository

Language:PythonBSD-3-Clause1307600

scikit-image

Image processing in Python

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osx-config-check

Verify the configuration of your OS X machine.

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rtl8812AU

Realtek 8812AU USB WiFi driver

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orbit-image-analysis

A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.

Language:JavaGPL-3.06100

bash-git-prompt

An informative and fancy bash prompt for Git users

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flysystem

Abstraction for local and remote filesystems

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oauth2-client

Easy integration with OAuth 2.0 service providers.

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PlainTasks

An opinionated todo-list plugin for Sublime Text editor (version 2 and 3)

Language:PythonMIT329200

scifio

SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.

Language:JavaBSD-2-Clause9400