Aakankshas90

mirna

microRNA profiling pipeline

build-your-own-sqlite

Definition for the sqlite challenge.

VCFshiny

bmc-microarray

This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioConductor: a case study using yeast2 Affymetrix arrays BMC Research Notes, 3:81.

GSoC-Accepted-Proposals

This repository serves as an archive of GSoC - Google Summer of Code accepted proposals of IIT (BHU), Varanasi students.

python-guide

Python best practices guidebook, written for humans.

plot-VCF

visual analysis of your VCF files

GSoC

Documentation repository of Google Summer of Code (GSoC) project ideas for cBioPortal and related projects

data-science-ipython-notebooks

Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

WhirlwindTourOfPython

The Jupyter Notebooks behind my OReilly report, "A Whirlwind Tour of Python"

Data-Analysis

Data Science Using Python

PythonBooks

Directory of free Python ebooks

SnpEff

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

learning_vcf_file

Learning the Variant Call Format

Iliad

ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

distiller-nf

A modular Hi-C mapping pipeline

julia

The Julia Programming Language

scipy

SciPy library main repository

jvarkit

Java utilities for Bioinformatics

syri

Synteny and Rearrangement Identifier

vcfR_documentation

Documentation for vcfR

Intro-to-R-flipped

Biostatistics-Guide

Biostatistics Guide

R-tricks

Tip and tricks for R

nextflow

A DSL for data-driven computational pipelines

nextflow-demos

Example Nextflow pipelines and programming techniques

snp_location

testing where SNP are in the humain genom

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants