Zilong-Li / array-imputation-workflow

imputation workflow for array data using shapeit2 and impute2

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Snakemake Imputation Workflow For Chip Array Data

Snakemake

Usage

Make sure you have all dependencies solved. Also, make sure all data are using the same reference coordinate, especially paying attention to the chromosome names. All inputs are configured by config/config.yaml. Check config/README for details.

Dependencies

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imputation workflow for array data using shapeit2 and impute2

License:MIT License


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Language:Python 100.0%