Yunyi Shen's repositories
UW-Course-Projects
All the projects need to be public during my school years in UW-Madison
IsingOccu-core
Ising based occupancy model with MCMC
SEIR-COVID19-CHN
SEIR model for COVID19, Chinese version translated from Alison et al.
camera-trap-classifier
Automatically identify animals in camera trap images by training a deep neural network.
APIS_Pipeline
Deep Learning Pipeline for APIS camera-trapping
Trait-in-Spp-Network
Trait based network analysis in distribution of species
ActivityPP
Model daily activity pattern of animal species using periodic Poisson process with camera trapping data
jekyll-image-gallery-example
Illustrates how to integrate a highly flexible image gallery into a Jekyll blog/website.
Camera_trapping_data_analysis_tools
Small tools for camera trapping data analysis
manuscript-templates
LaTeX templates for manuscripts. bioRxiv preprint and journal submission templates. For use on Overleaf.
SparseIsingSampler
Sampling Ising Model with Sparse Graph, Modified from R package IsingSampler. Used in IsingOccu
Pi_Monitored_Bird_Box
Monitor a bird box/feeder using camera, humidity, temperature and motion sensors using Raspberry Pi
Island_MRF_MCMC
MRF island biogeography modeling
induction_power
Analytical and numerical calculation for heating of a cylindrical workpiece placed in an induction coil.
Species_network_active_learning
Active Learning sampling design for multi-species occupancy study
scholar.py
A parser for Google Scholar, written in Python
Nonconvex-Euclidean-Distance-Geometry-Problem-Solver
A fast nonconvex algorithm for the Euclidean Distance Geometry Problem
Leaf_Area_Variance_in_Single_Individual
Research Project of Botany 455 2018 Fall
SDM-GIS-tools
Small tool box for GIS during species distribution modeling
Color-and-Pattern-Evolution-of-Pheasants
Understanding Why Pheasants are so Colorful with Data of Morphology, Phylogeny and Ecology
getNCBI
Small tool to search Genbank with keywords, and get FASTA. Also an exercise using Selenium with R.
Cross-Breeding-of-two-Pheasants
This is a working repo for Yunyi's project, cross breeding of pheasants.
infrared-bird-box
A bird box with the Pi NoIR Camera Module
qtcsdr
It turns your Raspberry Pi 2 and RTL-SDR into an amateur radio transceiver! (Released under BSD license.)
wi-thesis-template
LaTeX dissertation template for the University of Wisconsin--Madison
Detecting_pairwise_correlations_in_spike_trains
Supplementary material for the paper "Detecting pairwise correlations in spike trains: an objective comparison of methods and application to the study of retinal waves"