Yong-Xin Liu's starred repositories
gpt_academic
为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。
ggplot2-book
ggplot2: elegant graphics for data analysis
TBtools-II
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
Beautiful-Visualization-with-R
《R语言数据可视化之美》配套代码
MicrobiomeStatPlot
Interpretation and visualization of microbiome charts
EasyMicrobiomeR
Using R language in microbiome analysis
MicrobiomeAnalystR
A companion R package for the MicrobiomeAnalyst web server
genomes-pipeline
MGnify genome analysis pipeline
ggClusterNet
Microbial ecological network visualization clustering
sourcetracker2
SourceTracker2
MAG_Snakemake_wf
Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
COPD_multiomics
This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interaction in Chronic Obstructive Pulmonary Disease'.
EasyNanoMeta
A pipeline for nanopore long-read metagenomic analysis.
EasyDesign
A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.
DeepMetaProteome
A easy-to-use python package for mining natural diversity of any specific protein family from metagenomes