YeoLab / skipper

Skip the peaks and expose RNA-binding in CLIP data

YeoLab/skipper Issues

Some misleading in Skipper_config.py
Closed 4 months ago2
Error in rule get_nt_coverage:
Closed 5 months ago4
question about enriched terms
Closed 6 months ago2
Question about Tested windows.
Closed 7 months ago4
How to filter the output of skipper?
Closed in 18 hours7
analysis with only 1 SMI sample available
Closed 8 months ago2
[minor] Inconsistent output format between enriched_windows and enriched_re
Closed 9 months ago1
Paired-end sequencing in Skipper Manifest
Closed 9 months ago4
NameError in line 134 of Skipper.py: name 'directory' is not defined File "Skipper.py", line 134, in <module>
Updated 8 months ago6
Execution halted in fit_clip_betabinom.R
Closed a year ago3
missing value where TRUE/FALSE needed in finemap_enriched_windows.R
Updated a year ago
How to understand parameter INFORMATIVE_READ?
Closed a year ago5
Execution haulted due to error in rule fit_input_betabinomial_re_model
Closed a year ago11
Errors when empty reproducible windows file is used as input to consult_term_reference.R
Closed in 18 hours1
finemapped_windows from the manuscript
Closed a year ago3
R scripts appear incompatible with some R packages
Closed a year ago2
(partition_bam_reads) Error: line number 29869383 of file - has 3 fields, but 6 were expected.
Updated a year ago3
STAR alignment fails for larger (~80M) datasets due to limitOutSJcollapsed
Closed 2 years ago1
Where can I find "gencode.v38.annotation.k562_totalrna.gt1.tiled_partition.features.tsv.gz" ?
Closed 2 years ago1
Error in step findMotifsGenome.pl
Closed a year ago2
Error in call_enriched_windows.R
Closed 2 years ago2