Giters

YeoLab / skipper

Skip the peaks and expose RNA-binding in CLIP data

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

[minor] Inconsistent output format between enriched_windows and enriched_re

algaebrown opened this issue · comments

commented

enriched_windows contains only hits with FDR<0.2
enriched_re outputs everything (including FDR>0.2)

commented

Yes this is intentional because there aren't so many REs, and thresholding may depend heavily on the use case. In the paper I added a fold change cutoff beyond the FDR, which was not done for the genomic windows.