Yao-Xinzhi's starred repositories
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
MultiViewNMF
Partial Multi View Clustering via NMF
MultilayerExtraction
An R package to identify strongly connected vertex-layer communities in multilayer networks.
NTS-NOTEARS
Code for paper: NTS-NOTEARS: Learning Nonparametric DBNs With Prior Knowledge
NetworkInference.jl
Methods for inferring undirected networks from data
resVAE
resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.
QuickRecorder
A lightweight screen recorder based on ScreenCapture Kit for macOS / 基于 ScreenCapture Kit 的轻量化多功能 macOS 录屏工具
awesome-graph-explainability-papers
Papers about explainability of GNNs
BLAH8-LLM-for-Rice-GARE
Bioregulatory Event Extraction using Large Language Models: A Case Study of Rice Literature
ChatGenTitle
🌟 ChatGenTitle:使用百万arXiv论文信息在LLaMA模型上进行微调的论文题目生成模型
NLP4SciencePapers
Must-read papers on NLP for science.
Cancer-Alterome
Cancer-Alterome is a comprehensive and curated dataset that focuses on the investigation of regulatory events caused by gene alteration in the context of cancer.