XinsongDu

ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2

asciinema

Terminal session recorder 📹

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

Basic_ML_Practices

Exercises for machine learning

BEACH

bioconductor_docker

Docker Containers for Bioconductor - NEW!

FN_Mortality

Predicting mortality risk of adult in-hospital febrile neutropenia patients with machine learning approach

biodemo

BioML

BioML course assinments

bionitio

Demonstrating best practices for bioinformatics command line tools

bionitio-python

Demonstrating best practices for bioinformatics command line tools

cmmr

:green_book: CEU Mass Mediator RESTful API in R :rocket:

container-xcms

Container for xcms + various R scripts

course_test

data upload

cv_public

Xinsong's Curriculum Vitae

DRNN-Tensorflow

An implementation of disconnected RNN with Tensorflow

EDAM_Evaluation

Manuscript-DNNs-for-Classification-of-LCMS-Peaks

Code associated with the manuscript: Deep Neural Networks for Classification of LC-MS Spectral Peaks

nf-co.re

Code and files for the main nf-core website.

particle

A simple portfolio Jekyll theme:

Practical_RL

A course in reinforcement learning in the wild

RUMP

A Reproducible Untargeted Metabolomics Data Processing Pipeline

SECIMTools

A set of metabolomics tools for use in Galaxy

snakemake_tests

Test snakemake

spring-2020

UFRC-YAMP

YAMP: Yet Another Metagenomic Pipeline

XinsongDu

Myself

XinsongDu.github.io

Xinsong Du's Personal Website

xmsPANDA

YEDDA

YEDDA: A Lightweight Collaborative Text Span Annotation Tool. Code for ACL 2018 Best Demo Paper Nomination.