XiaomingXu1995

Auto-GPT

An experimental open-source attempt to make GPT-4 fully autonomous.

ChatPaper

Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复

cuda-samples

Samples for CUDA Developers which demonstrates features in CUDA Toolkit

CLI11

CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

Awesome-Bioinformatics

A curated list of awesome Bioinformatics libraries and software.

perf-ninja

This is an online course where you can learn and master the skill of low-level performance analysis and tuning.

CUDA-Programming-Guide-in-Chinese

This is a Chinese translation of the CUDA programming guide

unordered_dense

A fast & densely stored hashmap and hashset based on robin-hood backward shift deletion

htslib

C library for high-throughput sequencing data formats

nanopolish

Signal-level algorithms for MinION data

GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

HEIF-Utility

HEIF Utility - View/Convert Apple HEIF images on Windows.

miniasm

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

Complete-Striped-Smith-Waterman-Library

mothur

Welcome to the mothur project, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology & Immunology at The University of Michigan. This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community.

MashMap

A fast approximate aligner for long DNA sequences

sketch

C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings

strobealign

Aligns short reads using dynamic seed size with strobemers

strobemers

A repository for generating strobemers and evalaution

Data-Paralle-Cpp

个人翻译《Data Parallel C++》

dashing2

Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.

GoogleScholarGUI

谷歌学术爬取GUI版本

bindash

Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

DEXTRACTOR

Bax File Decoder and Data Compressor

UST

RabbitQCPlus

A more efficient quality control tool for sequencing data

syncmer

Validation of sycnmers compared to minimizers

strobemer_cpptest

An c++ implemention of strobemer

RabbitKSSD

RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures

thundergbm

ThunderGBM: Fast GBDTs and Random Forests on GPUs