Xiaotao Wang's repositories
HiC_pipeline
An easy-to-use Hi-C data processing software supporting distributed computation.
NeoLoopFinder
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
bioconda-recipes
Conda recipes for the bioconda channel.
Best-Labs-of-3D-Genome
Data and the co-authored network I extracted for lab selection in 3D genome research field
smoove
structural variant calling and genotyping with existing tools, but, smoothly.
StripeCaller
A toolkit for analyzing architectural stripes
domaincaller
A Python implementation of the original DI domain caller
negspy
Python NGS Repository
GSEApy
Gene Set Enrichment Analysis in Python
gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
cs-video-courses
List of Computer Science courses with video lectures.
pomegranate
Fast, flexible and easy to use probabilistic modelling in Python.
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
awesome-public-datasets
A topic-centric list of high-quality open datasets in public domains. Propose NEW data ☛☛☛PR☛☛☛
cooler
A cool place to store your Hi-C
free-programming-books
:books: Freely available programming books
pyensembl
Python interface to ensembl reference genome metadata (exons, transcripts, etc...)
Valentine-gift
For my girlfriend
speedseq
A flexible framework for rapid genome analysis and interpretation
imbalanced-learn
Python module to perform under sampling and over sampling with various techniques.
Project-Euler
Python solutions for Project Euler
Think-Complexity-Notes
Jupyter notebooks I created during reading Allen Downey's book Think Complexity
GradeSudoku
Python library for generating Sudoku puzzles of different grades