XiaopingLi's repositories
IRkernel
R kernel for Jupyter
velocyto.R
RNA velocity estimation in R
phateR
PHATE dimensionality reduction method implemented in R
shinyproxy
ShinyProxy - Open Source Enterprise Deployment for Shiny
pheatmap
Pretty heatmaps
TitanCNA
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
surf
The statistical utility for RBP functions (SURF)
shinyproxy-demo
ShinyProxy Demo Image
Cibersortx
Repository for Cibersortx
sleuth
Differential analysis of RNA-Seq
MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
singleseqgset
Gene set enrichment analysis for single-cell RNAseq data
Harvard-Data-Analysis-for-Life-Science-XSeries
Lectures, Code and Quizzes for the Data Science for Life Science XSeries
wasabi
Prepare Sailfish and Salmon output for downstream analysis
scanorama
Panoramic stitching of heterogeneous single cell transcriptomic data
scWGCNA
Weighted gene co-expression network analysis for scRNA-seq data in Seurat
awesome-expression-browser
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
Rtsne
R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding
PyNA
Computational Pipeline for RNA Sequence Variant, Allele Specific Expression, and Loss of Heterozygosity Identification
NetRep
R package containing functions for assessing the replication/preservation of network topology for weighted gene coexpression network modules in one or more independent datasets through permutation testing.
shinyproxy-template
Template for Deploying Shiny Apps on ShinyProxy
PyLOH
Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity