XiaopingLi's repositories
amazon-s3-resumable-upload
Amazon S3 MultiThread Resume Migration Solution (Amazon S3多线程断点续传迁移方案)
CellChat
R toolkit for inference and analysis of cell-cell communication from single-cell data
clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
github-slideshow
A robot powered training repository :robot:
GSEA_R
Updated implementation of the GSEA-P R application for modern R distributions
GSVA
Gene set variation analysis for microarray and RNA-seq data
harmony
Fast, sensitive and accurate integration of single-cell data with Harmony
infercnv
Inferring CNV from Single-Cell RNA-Seq
InfoSpider
INFO-SPIDER 是一个集众多数据源于一身的爬虫工具箱🧰，旨在安全快捷的帮助用户拿回自己的数据，工具代码开源，流程透明。支持数据源包括GitHub、QQ邮箱、网易邮箱、阿里邮箱、新浪邮箱、Hotmail邮箱、Outlook邮箱、京东、淘宝、支付宝、**移动、**联通、**电信、知乎、哔哩哔哩、网易云音乐、QQ好友、QQ群、生成朋友圈相册、浏览器浏览历史、12306、博客园、CSDN博客、开源**博客、简书。
Jupyter-R4.2.3-scRNA-seq-VDS-analysis
Dockerfile for building scRNA-seq/VDS analysis
nichenetr
NicheNet: predict active ligand-target links between interacting cells
QIIME2ChineseManual
QIIME 2中文文档(QIIME 2 Chinese Manual)
QRseq
An R shiny package for analysing RNA-seq Data
r-base
openanalytics/r-base Docker Image
Ribbon
A genome browser that shows long reads and complex variants better
rocker-versioned2
Run current & prior versions of R using docker. rocker/r-ver, rocker/rstudio, rocker/shiny, rocker/tidyverse, and so on.
salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
scrublet
Detect doublets in single-cell RNA-seq data
shinyproxy-config-examples
Configuration examples for ShinyProxy
SOAPnuke
A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files
ssGSEA2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
subtitles-view
基于javaFX的简单字幕处理桌面程序，集成在线翻译及语音转换
The-Art-of-Linear-Algebra
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"
Training-modules
Materials for short, half-day workshops
zero-to-jupyterhub-k8s
Helm Chart & Documentation for deploying JupyterHub on Kubernetes