Wytamma / snk-basic-pipeline

An example pipeline that can be installed with snk

EXAMPLE WORKFLOW

This is a simple snakemake worflow that demonstrates how to use snk.

Installation

snk install wytamma/snk-basic-pipeline

Usage

Download the example data

snk-basic-pipeline script run download_data

Run the workflow

snk-basic-pipeline run 

Configure the workflow

snk-basic-pipeline run --sample A --sample B