WillJackson94

WillJackson94

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faceswap

Deepfakes Software For All

Language:PythonLicense:GPL-3.0Stargazers:49961Issues:1526Issues:856

xgboost

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow

Language:C++License:Apache-2.0Stargazers:25846Issues:912Issues:5226

neural-networks-and-deep-learning

Code samples for my book "Neural Networks and Deep Learning"

Language:PythonStargazers:15730Issues:1095Issues:0

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Language:PythonLicense:BSD-3-ClauseStargazers:3133Issues:160Issues:790

PyTables

A Python package to manage extremely large amounts of data

Language:PythonLicense:BSD-3-ClauseStargazers:1294Issues:63Issues:726

bedtools2

bedtools - the swiss army knife for genome arithmetic

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

FIt-SNE

Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

Language:C++License:NOASSERTIONStargazers:585Issues:36Issues:75

cbioportal

cBioPortal for Cancer Genomics

Language:JavaLicense:AGPL-3.0Stargazers:581Issues:52Issues:6032

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

Language:PerlLicense:Apache-2.0Stargazers:442Issues:32Issues:1065

seqan3

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Language:C++License:NOASSERTIONStargazers:396Issues:26Issues:766

manta

Structural variant and indel caller for mapped sequencing data

Language:C++License:GPL-3.0Stargazers:391Issues:40Issues:302

pagoda2

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

Language:RLicense:NOASSERTIONStargazers:191Issues:13Issues:89

neusomatic

NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection

Language:PythonLicense:NOASSERTIONStargazers:167Issues:12Issues:52

wot

A software package for analyzing snapshots of developmental processes

Language:Jupyter NotebookLicense:BSD-3-ClauseStargazers:134Issues:12Issues:81
Language:PythonLicense:BSD-3-Clause-ClearStargazers:131Issues:19Issues:610

cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

Language:JavaLicense:Apache-2.0Stargazers:88Issues:30Issues:421

gatk4-somatic-snvs-indels

This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.

Language:wdlLicense:BSD-3-ClauseStargazers:76Issues:17Issues:0

mutation-signatures

Create mutation signatures from MAF's, and decompose them into Stratton signatures

ghelper

谷歌上网助手手动安装包

Language:CSSStargazers:54Issues:1Issues:0

seq2HLA

In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class.

Language:PythonLicense:MITStargazers:45Issues:3Issues:16

PyHLA

Python for HLA analysis: summary, association analysis, zygosity test and interaction test

CIBERSORT

A shell to facilitate loading / running CIBERSORT software in structured environments

Language:PythonLicense:Apache-2.0Stargazers:25Issues:3Issues:1

singleLiverCells

Scripts for processing single liver cells RNA-Seq 10X Genomics Data

netTCR

predicting peptide and TCR interaction

Language:PythonLicense:GPL-3.0Stargazers:20Issues:7Issues:4

awesome-python-sources

include awesome python sources

HCA-reproducibility

A case study on the detailed reproducibility of a human cell atlas project

Language:Jupyter NotebookStargazers:3Issues:1Issues:0