WeilerP

Philipp Weiler's repositories

sc_analysis_template

Template repository for analysis of single-cell data and tools.

Language:Jupyter NotebookBSD-3-Clause200

anndata

Annotated data.

Language:PythonBSD-3-Clause000

beetles-tda

Python code for corresponding blog post on Towards Data Science

Language:Jupyter NotebookApache-2.0000

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell010

cellrank

CellRank for directed single-cell fate mapping

Language:PythonBSD-3-Clause000

cellrank_notebooks

Tutorials and figures for CellRank

Language:Jupyter NotebookBSD-3-Clause000

fastai

The fastai deep learning library, plus lessons and tutorials

Language:Jupyter NotebookApache-2.0010

giotto-learn

A high performance topological machine learning toolbox in Python

Language:C++NOASSERTION010

moscot

Multi-omic single-cell optimal transport tools

Language:PythonBSD-3-Clause000

muon

muon is a multimodal omics Python framework

Language:PythonBSD-3-Clause010

sc-templates

Templates for single-cell pipelines

BSD-3-Clause01 1

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

Language:PythonBSD-3-Clause010

scvelo

RNA Velocity generalized through dynamical modeling

Language:PythonBSD-3-Clause01 2

scvelo_notebooks

Language:Jupyter Notebook010

SEACells

SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data

Language:Jupyter NotebookGPL-2.0000

seurat

R toolkit for single cell genomics

Language:RGPL-3.0010

spatialdata-notebooks

Language:Jupyter NotebookBSD-3-Clause000

spectra

Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms

MIT000

tradeSeq-py

TRAjectory Differential Expression analysis for SEQuencing data

Language:PythonMIT000

us-election-tda

Language:Jupyter NotebookApache-2.0010

wot

A software package for analyzing snapshots of developmental processes

Language:Jupyter NotebookBSD-3-Clause010