MicrobiotaProcess is an R package for analysis, visualization and biomarker discovery of microbial datasets. It supports calculating alpha index and provides functions to visualize rarefaction curves. Moreover, it also supports visualizing the abundance of taxonomy of samples. And It also provides functions to perform the PCA, PCoA and hierarchical cluster analysis. In addition, MicrobiotaProcess also provides a method for the biomarker discovery of metagenome or other datasets.
Shuangbin Xu and Guangchuang Yu
School of Basic Medical Sciences, Southern Medical University
Get the released version from Bioconductor:
## try http:// if https:// URLs are not supported ## the url of mirror
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
## BiocManager::install("BiocUpgrade") ## you may need this
BiocManager::install("MicrobiotaProcess")the development version from github:
if (!requireNamespace("remotes", quietly=TRUE))
install.packages("remotes")
remotes::install_github("YuLab-SMU/MicrobiotaProcess")We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.