WatsonWoo / EasyAmplicon

Easy Amplicon data analysis pipeline

EasyAmplicon (易扩增子)

An easy using, open-resource, reproducible, and community-based pipeline for amplicon data analysis in microbiome (简单易学易用、开源、可重复且社区支持的扩增子数据分析流程)

Version (版本)：EasyAmplicon v1.11

Update (更新时间)：2021/5/18

Pipeline Manual and file description (流程使用和文件介绍)

Using RStudio open the pipeline.sh

Files description:

• Readme.md # Introduction and install
• pipeline.sh # Command-line analysis for Windows and Linux
• pipeline_mac.sh # Command-line analysis for MacOS
• result/ # Example data
• result/Diversity-tutorial.Rmd # Interactive analysis in R and output reproducible report in HTML format

What can we do?

• Analysis and visualization of microbiome data, especially for 16S rDNA amplicon;
• From raw data into feature tables;
• Support 20+ analysis methods and publish-read visualization;
• Finish your project at your laptop in 3 hours;
• Chinese manual and video supported.

Figure 1. Pipeline of EasyAmplicon for analysis pair-end amplicon data.

**Figure 2. Examples of visualizations. **

Install

FAQ