Wayne Wang's repositories
QIIME2ChineseManual
QIIME 2中文文档(QIIME 2 Chinese Manual)
5hmUseq
Data analysis for sequencing 5-hydroxymethyluracil at single-base resolution (via chemical modification and mismatch formation)
bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
csvtk
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
dadi_pipeline
An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting goodness of fit tests, and plotting.
estimate_genome_size.pl
Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish
Genome_assemble_FALCON
FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
ggplotify
ggplot everything
ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
lastz
Program for aligning DNA sequences, a pairwise aligner.
Metagenome
Metagenome analysis pipeline
my-R
a small collection for my R scripts
NGS_data_processing
Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
python-machine-learning-book
The "Python Machine Learning" book code repository and info resource
RAxML
RAxML
RNAseq-workflow
A repository for setting up a RNAseq workflow
s-plot
A simple plot library
seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
seqtk
Toolkit for processing sequences in FASTA/Q formats
TBtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis