Volker Bergen's repositories
anndata
Annotated data.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
curved-quivers
Matplotlib function to represent a vector field with path-following arrows
docs
PrestaShop technical documentation
gammapy
A Python package for gamma-ray astronomy
jira
Python JIRA Library is the easiest way to automate JIRA. Support for py27 was dropped on 2019-10-14, do not raise bugs related to it. Show that you care about the future of the library by donating $1, is not about the money!
kipoi
Kipoi's model zoo API
knowledge-repo
A next-generation curated knowledge sharing platform for data scientists and other technical professions.
loompy
Python implementation of the Loom file format - http://loompy.org
MAGIC
MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
MLBox
MLBox is a powerful Automated Machine Learning python library.
mnnpy
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
modAL
A modular active learning framework for Python3
nbsphinx
:ledger: Sphinx source parser for Jupyter notebooks
numpy
The fundamental package for scientific computing with Python.
pepy
pepy is a site to get statistics information about any Python package.
population-diffusions
Code and paper repository for the ICML paper "Learning population level diffusions with generative recurrent networks"
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
scanpy-tutorials
Scanpy Tutorials.
scanpy_usage
Scanpy use cases.
scvelo
RNA Velocity generalized through dynamical modeling
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
sphinx-nbexamples
Create an examples gallery with sphinx from Jupyter Notebooks