VirtualFlyBrain / vfb-neo2owl-test

Some test code to compare the results of the export to the orginal source (neo2owl plugin)

Testing procedure

Local

1. Make fix to neo2owl
2. Make sure no System.exit and System.out anywhere unintended. Make sure private static boolean testmode = false; in OWL2OntologyImporter.java.
3. Build using clean compiler:compile package
4. Run deploy.sh in neo4j2owl (new editor: need to update scripts with the correct paths). This copies the freshly build neo2owl.jar to some local neo4j instance. Note that this instance must be configured with dbms.security.procedures.unrestricted=ebi.spot.neo4j2owl.* and sufficient memory.
5. Run/restart the neo4j instance (localhost:7474)
6. In vfb-neo2owl-test, run docker-run. This will export whatever is loaded in the neo2owl instance as OWL into some specified (see Makefile) directory and runs a ROBOT diff.