Download pickle.zip from link
To prepare your own OCT dataset for SCR detection
cd csat/
python make_pickle_data.py
Each pickle file is a dictionary of tensors with the following entries
tensor = {'img':image, 'box':bounding_boxes, 'label':SCR_label, 'name':filename}
Generate positive and negative pairs for pre-training
python util/util.py
The directory structure should be similar to
- csat
- data
- positive_<fold>.txt
- negative_<fold>.txt
- scr.yaml
- pickle
- eval
- loss
- ...
Download pre-trained model from link
# to run with default arguments
python pretrain.py
# to modify arguments
python pretrain.py --root <str> --world_size <int> --resume <bool> --resume_weight <str> --train_folder <str> --val_folder <str> --epochs <int> --folds <int> --cf <int> --batch_size <int>
# to run with default arguments
python train.py
# to modify arguments
python train.py --root <str> --dataroot <str> --world_size <int> --resume <bool> --resume_weight <str> --pretrain <bool> --pretrain_weights <str> --epochs <int> --nc <int> --r <int> --space <int> --train_batch <int> --val_batch <int>
# to run with default arguments
python validate.py
# to modify arguments
python validate.py --root <str> --dataroot <str> --world_size <int> --weights <str> --nc <int> --r <int> --space <int> --batch <int>