Deep_learner's starred repositories
pytorch-grad-cam
Advanced AI Explainability for computer vision. Support for CNNs, Vision Transformers, Classification, Object detection, Segmentation, Image similarity and more.
tcga-glioma
Machine learning project classifying glioma gradings in R. Somatic mutation data collected from The Cancer Genome Atlas. Algorithms include logistic regression, Adaptive Boosting, Linear SVM, Random Forest, and Naive Bayes
tcga-cancer-classification
A deep learning approach to classify cancer type from TCGA data.
fast-stain-normalization
:star2: GPU-accelerated stain normalization command line tool
RandStainNA
RandStainNA: Simple and efficient augmentations for histology [MICCAI 2022]
StainTools
Tools for tissue image stain normalisation and augmentation in Python 3
Lung-Cancer-Risk-Prediction
Lung cancer risk prediction from CT using fine-tuned I3D neural network
PyMethylProcess
Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
3D-genome-risk-prediction
[ACM-BCB 2023 Oral Presentation] Official repository of "Deep learning-based survival prediction using DNA methylation-derived 3D genomic information"
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
PathomicFusion
Fusing Histology and Genomics via Deep Learning - IEEE TMI
tensorflow-huge-model-support
This library is designed to speed up huge model training on unified memory.
whole-slide-cnn
This repository provides scripts to reproduce the results in the paper "An annotation-free whole-slide training approach to pathological classification of lung cancer types by deep learning".
deepslide
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Image-Cleaning
This repository is created to contain code that could be used to pre- and post-process histology images.
google-research
Google Research