Upalabdha's repositories
quatro-manuscript
A template for manuscripts using quatro
Rmd-manuscript-template-dir
A template dir structure for Rmd manuscript for my taste
msNGLB
Repo for manuscript of NGLB
ud-cv
Awesome CV in R. Based on the vitae package and Dominique Makowski’s template.
UpalabdhaD.github.io
My personal website
Orthofinder_to_CAFE_scripts
This contains custom scripts to process orthofinder output for CAFE5 analysis
assembly-stats
Assembly statistic visualisation
UpalabdhaD_old__ghp
A beautiful, simple, clean, and responsive Jekyll theme for academics
phylogenomics_phylogentics_tutorials
Tutorials on phylogenetic and phylogenomic inference
bioinfo_commandline_oneliners
Useful bash one-liners for bioinformatics.
compare_genomes
A comparative genomics workflow using Nextflow, conda, Julia and R
SequenceTools
Programs used in the lab for various tasks
karyotypeR
Program for computing karyoytypes from aDNA data.
scRNA-seq_notes
A list of scRNA-seq analysis tools
GATK_parallel
Development of short tutorials for UNM's Center for Advanced Research Computing
pymodulon
Python package for analyzing and visualizing iModulons
circlator
A tool to circularize genome assemblies
awesome-nanopore
A curated list of awesome nanopore analysis tools.
appliedgenomics2022
Materials for EN.601.449/EN.601.649 Computational Genomics: Applied Comparative Genomics
snakemake-training
Increasingly complete example bioinformatics workflow
GGisy
Genome-Genome circle synteny
vcfstats
Powerful statistics for VCF files
ANIclustermap
A tool for drawing ANI clustermap between all-vs-all microbial genomes using fastANI & seaborn