Upalabdha's repositories
awesome-sequencing-tech-papers
A collection of publications on comparison of high-throughput sequencing technologies.
awesome-ggplot2
A curated list of awesome ggplot2 tutorials, packages etc.
biovcnet.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
awesome-courses
:books: List of awesome university courses for learning Computer Science!
SDG_LAB_DB
Data,Scripts and other NGS analysis materials for SDG LAB
modulome-workflow
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
bioicons
A library of free open source icons for science illustrations in biology and chemistry
literature_analysis_pubmed
Part of Pat's Code Club series that started 2022-05-12
star_protocols_wes3x
Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers
DeepSeqAnalysis
Course materials for a graduate class in applied bioinformatics for biologists
MGCplotter
Microbial Genome Circular plotting tool using Circos
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
Crickets_Genome_Annotation
Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.
Promotech
Machine-learning-based general bacterial promoter prediction tool.
genomescope
Fast genome analysis from unassembled short reads
R-for-bioinformatics
R course for bioinformatics
tormes
Making whole bacterial genome sequencing data analysis easy
shape-based-TF-binding-prediction
A workflow to learn protein-DNA binding specificity from experimental peak data based on DNA shape.
data-science-interview-questions-and-answers
Data science interview questions with answers. Not ideally (yet)
CLASS_2021
Statistical and computational analysis of the human genome
GermlineMutationCalling
An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
FastANI_heatmap
This repository contains R code for building a heatmap and histogram with the output of FastANI
Analyses_Pipelines
Analyses pipelines that I use for my work
HCGS-BASH-tutorial
Getting started on a server
bioinformatics-cafe
Unsorted scripts for bioinformatics
Sphingomonas-EggNOG-Workbook
Jupyter Notebook for Parsing and comparing annotations using EmapperV2
awesome-biology
Curated (meta)list of resources for Biology.